Crystallographic studies of fish hemoglobins
Main Article Content
Abstract
The present work reports our succesfull experience concerning crystallization of four fish hemoglobins from three Brazilian species of Teleosts: Liposarcus anisitsi, Brycon cephalus and Piaractus mesopotamicus. The data shown here is part of a systematic functional and structural study of fish hemoglobins with the aim of better understanding the outstanding range of functional and structural properties exhibited by these proteins. We also present a reduced sparse-matrix method for crystallization of fish hemoglobins, which can reduce the amount of hemoglobin initially used in the crystallization experiments.
Metrics
Article Details
This work is licensed under a Creative Commons Attribution 4.0 International License.
The corresponding author transfers the copyright of the submitted manuscript and all its versions to Eclet. Quim., after having the consent of all authors, which ceases if the manuscript is rejected or withdrawn during the review process.
When a published manuscript in EQJ is also published in other journal, it will be immediately withdrawn from EQ and the authors informed of the Editor decision.
Self-archive to institutional, thematic repositories or personal webpage is permitted just after publication. The articles published by Eclet. Quim. are licensed under the Creative Commons Attribution 4.0 International License.
References
DE AZEVEDO, W. F. JR., MUELLER-DIECKMANN, H-. J., SCHULZE-GAHMEN, U., WORLAND, P. J., SAUSVILLE, E., KIM, S-. H. Structural basis for specificity and potency of a flavonoid inhibitor of human CDK2, a cell cycle kinase. Proc. Natl. Acad. Sci. USA. v. 93. p.2735-40, 1996. [ Links ]
DE AZEVEDO, W. F., JR., LECLERC, S., MEOJER, L., HAVLICEK, L., STRNAD, M. and KIM, S. –H. Inhibition of cyclin-dependent kinases by purine analogues: crystal structure of human cdk2 complexed with roscovitine. Eur. J. Biochemistry, v.243, 518-26, 1997. [ Links ]
BLUNDELL, T. L., JOHNSON, L. N. Protein Crystallography. London: Academic Press, 1976. [ Links ]
BRÜNGER, A. T. X-PLOR Version 3.1: A system for crystallography and NMR. New Haven: Yale University Press, 1992. [ Links ]
DELATORRE, P., SMARRA, A. L. S., FADEL, V., CANDURI, F., DELLAMANO, M., BONILLA-RODRIGUEZ, G. O., DE AZEVEDO JR, W. F. Purification, crystallization, and Patterson search of hemoglobin-IV from the armored catfish Liposarcus anisitsi. Acta Crystallographica D. 2000. (In Press). [ Links ]
DE YOUNG, A., KWIATKOWSKI, L. D., NOBLE, R. W. Fish Hemoglobins. Methods of Enzymol. v. 231, p. 124-50, 1994. [ Links ]
DRENTH, J. Principles of protein x-ray crystallography. Berlin: Springer-Verlag, 1994. 305p. [ Links ]
FADEL, V., HONDA, R.T., DELLAMANO, M., SMARRA, A. L. S., DELATORRE, P., OLIVIERI, J. R., BONILLA-RODRIGUEZ, G. O., DE AZEVEDO JR., W. F. Purification, crystallization, and preliminary X-ray diffraction analysis of carbomonoxy hemoglobin-II from the fish Piaractus mesopotamicus (Pacu). Acta Cryst. D56, p.366-7, 2000. [ Links ]
FAGO, A., MALTE, H., DOHN, N. Bicarbonate binding to hemoglobin links oxygen and carbon dioxide transport in hagfish. Resp. Physiol. v. 115, p. 309-15, 1999. [ Links ]
HONDA, R., DELATORRE, P., FADEL, V., CANDURI, F., DELLAMANO, M., DE AZEVEDO JR., W. F., BONILLA-RODRIGUEZ, G. O. Crystallisation, preliminary X-ray analysis, and molecular-replacement solution of Carbomonoxy form of haemoglobin-I from the fish Brycon cephalus. Acta Cryst. D56, 2000. [ Links ](In Press).
KIM. S. -H., SCHULZE-GAHMEN, U., BRANDSEN, J., DE AZEVEDO, W. F., JR. Structural basis for chemical inhibition of CDK2. Progress in Cell Cycle Research, v. 2, 137-145. Chapter 14. (Meijer, L., Guidet, S. & Vogel, L., eds.) Plenum Press, New York, USA., 1996. (Review). [ Links ]
JANCARICK, J. AND KIM, S. H. Sparse matrix sampling – a screening method for crystallization of proteins. J. Appl. Crystallogr. v. 24, p. 409-11, 1991. [ Links ]
McREE, D. E. Pratical Protein Crystallography. San Diego: Academic Press, Inc., 1993. 386p. [ Links ]
MATTHEWS, B. W. Solvent content of protein crystals. J. Mol. Biol. v. 33, p. 491-7, 1968. [ Links ]
NAVAZA, J. AMoRe: An Automated Package for Molecular Replacement. Acta Cryst. A50, p. 157-63, 1994. [ Links ]
OTWINOWSKI, Z. In Proceedings of the CCP4 Study Weekend, edited by L. Sawyer, N. Isaacs & S. Bailey, Warrington: Daresbury Laboratory. p. 56-62. 1993. [ Links ]
POLIKARPOV, I., OLIVA, G., CASTELLANO, E.E., GARRATT, R., ARRUDA, P., LEITE, A., CRAIEVICH, A. Protein crystallography station at LNLS, The Brazilian National Synchrotron Ligth Source. Nucl. Instrum. Methods A, v. 405, p. 159-64, 1998. [ Links ]
POLIKARPOV, I., PERLES, L. A., DE OLIVEIRA, R. T., OLIVA, G., CASTELLANO, E.E., GARRATT, R., CRAIEVICH, A. Set-up and experimental parameters of the protein crystallography beamline at Brazilian National Synchrotron Laboratory. J. Synchrotron Rad. v. 5, p. 72-6, 1998. [ Links ]
RODGERS, D. W. Cryocrystallography. Structure, v. 2, n. 12, p. 1135-1140, 1994. [ Links ]
SEIXAS, F. A., DE AZEVEDO, W. F. JR., COLOMBO, M. F. Crystallization and X-Ray diffraction data analysis of human deoxy-hemoglobin A0 stripped of any anions. Acta Cryst. D55, p. 1914-6, 1999. [ Links ]
SMARRA, A. L. S, ARNI, R. K. DE AZEVEDO, JR., W. F., COLOMBO, M. F., BONILLA-RODRIGUEZ, G. O. Crystallization and X-ray diffraction data analysis of Oxyhemoglobin-I from the Liposarcus anisitsi (Pisces) Protein and Peptide Letters. v. 4, p.349-54, 1997. [ Links ]
SMARRA, A. L. S., FADEL, V., DELLAMANO, M., OLIVIERI, J.R., DE AZEVEDO, JR., W. F., BONILLA-RODRIGUEZ, G. O. Crystallization, preliminary X-ray diffraction analysis and Patterson search of oxyhaemoglobin I from the wolf (Chrysocyon brachiurus) Acta Cryst. D55, p. 1618-9, 1999. [ Links ]
SMARRA, A. L. S., DE AZEVEDO, JR., W. F., FADEL, V., DELATORRE, P., DELLAMANO, M., COLOMBO, M. F., BONILLA-RODRIGUEZ, G. O. Purification, crystallization, and preliminary X-ray analysis of hemoglobin-I from the armored catfish Liposarcus anisitsi. Acta Cryst. D56, p. 495-7, 2000. [ Links ]